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SRX1563504: GSM2055344: 3045-NA AD; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 107.2M spots, 16.3G bases, 12.7Gb downloads

Submitted by: NCBI (GEO)
Study: Expression profiling by high throughput sequencing of tumors derived from human prostate epithelial cells transformed with the oncogenes N-Myc and myrAKT1.
show Abstracthide Abstract
MYCN amplification and overexpression are common in neuroendocrine prostate cancer (NEPC). However, the impact of aberrant N-Myc expression in prostate tumorigenesis and the cellular origin of NEPC have not been established. We define N-Myc and activated AKT1 as oncogenic components sufficient to transform human prostate epithelial cells to prostate adenocarcinoma and NEPC including the small cell prostate carcinoma (SCPC) variant with phenotypic and molecular features of aggressive, late-stage human disease. We directly show that prostate adenocarcinoma and NEPC can both arise from a common epithelial clone. Further, N-Myc is required for tumor maintenance and destabilization of N-Myc through Aurora A kinase inhibition reduces tumor burden. Our findings establish N-Myc as a driver of NEPC and a target for therapeutic intervention. Expression profiling by high throughput sequencing of experimentally generated human tumors with mixed NEPC and prostate adenocarcinoma. Overall design: Gene expression analysis of laser capture microdissected NEPC and adenocarcinoma from three independent engineered human tumors of mixed NEPC and prostate adenocarcinoma phenotype.
Sample: 3045-NA AD
SAMN04461521 • SRS1278029 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Tumors were embedded and frozen in OCT freezing compound. Frozen sections were mounted on laser capture microdissection slides and stained with the Arcturus Histogene Frozen Section Staining Kit. Laser capture microdissection of tumor regions was performed on a Leica Microsystems LMD7000. RNA was isolated with the Arcturus PicoPure RNA Isolation Kit. cDNA libraries were prepared from Illumina RNA using the TruSeq RNA Sample Prep Kit v2 per manufacturer's protocol.
Experiment attributes:
GEO Accession: GSM2055344
Links:
Runs: 1 run, 107.2M spots, 16.3G bases, 12.7Gb
Run# of Spots# of BasesSizePublished
SRR3148218107,161,94916.3G12.7Gb2016-02-08

ID:
2211671

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